Peter F. Stadler

Jens Stoye

João Carlos Setubal

This second edition provides new and updated chapters covering computational and mathematical techniques and concepts related to the field of comparative genomics. The topics covered in the chapters range from those that address general techniques and concepts that apply to all organisms to others that are specialized and apply to specific biological systems such as viruses, bacteria, nematodes, and insects. Well-known comparative genomics web-based platforms are also covered in specific chapters. Written in the highly successful Methods in Molecular Biology series format, many chapters include introductions to their respective topics and step-by-step comparison procedures, demonstrated on actual sets of genome sequences. Authoritative and cutting-edge, Comparative Genomics: Methods and Protocols, Second Edition aims to ensure successful results in the further study of this vital field.

Methods and Protocols

Comparative Genomics

Holger Boche

Christian Deppe

Andreas Winter

Raymond W. Yeung

Ulrich Tamm

Ingo Althöfer

Rami Ezzine

Ning Cai was an eminent mathematician, engineer and computer scientist who made many significant contributions to information theory. In particular, his work on network coding theory created a new research direction for the community. Prof. Cai’s passion for science inspired his collaborators across the fields of classical and quantum information theory, combinatorics, computation, post-Shannon theory, and coding theory, and the contributions in this volume reflect his success as a researcher and mentor.

Festschrift in Memory of Ning Cai

Information Theory and Related Fields

Aaron Darling

This book constitutes the refereed proceedings of the 13th International Workshop on Algorithms in Bioinformatics, WABI 2013, held in Sophia Antipolis, France, in September 2013. WABI 2013 is one of seven workshops which, along with the European Symposium on Algorithms (ESA), constitute the ALGO annual meeting and highlights research in algorithmic work for bioinformatics, computational biology and systems biology. The goal is to present recent research results, including significant work-in-progress, and to identify and explore directions of future research. The 27 full papers presented were carefully reviewed and selected from 61 submissions. The papers cover all aspects of algorithms in bioinformatics, computational biology and systems biology.

13th International Workshop, WABI 2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings

Algorithms in Bioinformatics

Sören W. Perrey

Fast Approximation to the NP-hard Problem of Multiple Sequence Alignment

Juha Kärkkäinen

This book constitutes the refereed proceedings of the 23rd Annual Symposium on Combinatorial Pattern Matching, CPM 2012, held in Helsinki, Finland, in July 2012. The 33 revised full papers presented together with 2 invited talks were carefully reviewed and selected from 60 submissions. The papers address issues of searching and matching strings and more complicated patterns such as trees, regular expressions, graphs, point sets, and arrays. The goal is to derive non-trivial combinatorial properties of such structures and to exploit these properties in order to either achieve superior performance for the corresponding computational problems or pinpoint conditions under which searches cannot be performed efficiently. The meeting also deals with problems in computational biology, data compression and data mining, coding, information retrieval, natural language processing, and pattern recognition.

Jens Stoye

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